Uusi opinto-opas (sisältäen myös opetusohjelmat) lukuvuodelle 2018-2019 sijaitsee osoitteessa https://opas.peppi.utu.fi . Tältä sivustolta löytyvät enää vanhat opinto-oppaat ja opetusohjelmat.

The new study guide (incl. teaching schedules) for academic year 2018-2019 can be found at https://studyguide.utu.fi. This site contains only previous years' guides.

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Archived Curricula Guide 2014–2016
Curricula Guide is archieved. Please refer to current Curricula Guides
BIOI4440 Biological Data Analysis with R 5 ECTS
Organised by
Bioinformatics

General description

The purpose of this course to teach the R statistical environment to be applied in biological data analysis.

Learning outcomes

After this course, the students will be able to use R for analyzing diverse data types from very different biological experiments. Lectures will introduce the theoretical aspects of the introduced methodologies, and after that, students will have opportunity to explore the practical ways of performing the analyses by obligatory homework exercises.

Contents

1. Introduction to R: Installation, package management, basic operations
2. Sequences and sequence analysis
3. Annotating gene groups: Ontologies, pathways, enrichment analysis
4. Proteomics: mass spectometry
5. Reconstructing gene regulation networks
6. Network analysis: iGraph

Teaching methods

Lectures. Independent work by following the provided instructions. Work and learning must be documented by Moodle postings.

Teaching language

English

Modes of study

Exercises, exam

Evaluation

Numeric 0-5.

Study materials

Lecture notes and other material provided by the teacher

Belongs to following study modules

Department of Future Technologies
Department of Future Technologies
2014–2015
Teaching
Archived Teaching Schedule. Please refer to current Teaching Shedule.
Implementation details are unavailable.
Department of Future Technologies
DP in Computer Science
DP in Computer Science
DP Bachelor of Science in Techn.(Communication St)
DP in Information and Communication Technology
Finnish Study Modules